Integrating Bacterial ChIP‐seq and RNA‐seq Data With SnakeChunks
نویسندگان
چکیده
منابع مشابه
SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer
Summary Short reads sequencing technology has been used for more than a decade now. However, the analysis of RNAseq and ChIPseq data is still computational demanding and the simple access to raw data does not guarantee results reproducibility between laboratories. To address these two aspects, we developed SeqBox, a cheap, efficient and reproducible RNAseq/ChIPseq hardware/software solution bas...
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November 21, 2016 Type Package Title iASeq: integrating multiple sequencing datasets for detecting allele-specific events Version 1.18.0 Date 2012-02-13 Author Yingying Wei, Hongkai Ji Maintainer Yingying Wei Description It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across s...
متن کاملPackage ‘ iASeq ’
April 25, 2017 Type Package Title iASeq: integrating multiple sequencing datasets for detecting allele-specific events Version 1.20.0 Date 2012-02-13 Author Yingying Wei, Hongkai Ji Maintainer Yingying Wei Description It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across stud...
متن کاملTitle Iaseq: Integrating Multiple Sequencing Datasets for Detecting Allele-specific Events
October 4, 2013 Type Package Title iASeq: integrating multiple sequencing datasets for detecting allele-specific events Version 1.4.0 Date 2012-02-13 Author Yingying Wei, Hongkai Ji Maintainer Yingying Wei Description It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across stud...
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Chenopodium quinoa (quinoa) is an emerging crop that produces nutritious grains with the potential to contribute to global food security. Quinoa can also grow on marginal lands, such as soils affected by high salinity. To identify candidate salt tolerance genes in the recently sequenced quinoa genome, we used a multifaceted approach integrating RNAseq analyses with comparative genomics and topo...
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ژورنال
عنوان ژورنال: Current Protocols in Bioinformatics
سال: 2019
ISSN: 1934-3396,1934-340X
DOI: 10.1002/cpbi.72